软件成果

miR2Disease
miR2Disease, a manually curated database, aims at providing a comprehensive resource of miRNA deregulation in various human diseases.


Personal Genome Browser
Personal Genome Browser, a genome browser for visualizing individual genetic variants and their functions, with support of diverse genomic annotations and knowledge bases.


SIDD
SIDD aims to establish semantic associations among disease-related databases and integrate them to provide disease global view at biological levels.


PRISM
PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events.


DNMFilter


lncRNA2Target
lncRNA2Target, a manually curated database for differentially expressed genes after lncRNA knockdown or over expression.


LncRNA2Function
LncRNA2Function, an ontology-driven user-friendly web interface named lncRNA2Function, which enables researchers to browse the lncRNAs associated with a specific functional term, the functional terms associated with a specific lncRNA, or to assign functional terms to a set of human lncRNA genes, such as a cluster of co-expressed lncRNAs.


TF2Lncrna
TF2Lncrna, a web interface contains two panels on the left and right hand side, which allow users to input a set of lncRNAs for finding their common TFs or for browsing and retrieving TF-lncRNA regulatory relationships for a specific TF or lncRNA in a specific cell line of interest.


InteGO2
InteGO2 is an easy-to-use web interface which can be used to calculate and visualize the gene-to-gene functional similarities based on GO.


Similar Patient Finder
The Similar Patient Finder (SPF), a web-based molecular level aided diagnosis tool, is aimed at helping physicians explore the patients´ similarity at the molecular level and facilitate prescription making.


Methylation-dependent transcription factors database
To make it convenient for researchers to know what transcription factors are regulated by DNA methylation and the influence of DNA methylation of transcription factor binding sites, we develop this database to provide a comprehensive resource of methylation-dependent transcription factor.